Fmri GitHub Repositories

Machine learning for NeuroImaging in Python

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Pycortex is a python-based toolkit for surface visualization of fMRI data

Brain Imaging Analysis Kit

SPM (Statistical Parametric Mapping) - Development Version

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Representational Similarity Analysis (RSA), & Inter-Subject Correlation (ISC)

Graph theory analysis of brain MRI data

Official AFNI source and documentation

TE-dependent analysis of multi-echo fMRI

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Python toolbox for analyzing imaging data

ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

Code supporting 'Geometric constraints on human brain function'

A dynamic connectome mapping module in python.

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

[NeurIPS 2024] Official code base for NeuroClips

Easy to use web database for statistical maps.

Group ICA/IVA software (MATLAB)

Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib

Voxelwise Encoding Model tutorials from the Gallant lab.

The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

Temporal Network Tools

This is the repository for the BioImage Suite Web Project

Classifying ADHD fMRI data with a CNN+LSTM Model

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Julia module for reading/writing NIfTI MRI files

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

This repository is dedicated for the tutorial on network and topological neuroscience.

Automatic Analysis (aa)