Endoscopy GitHub Repositories

Project Imaging-X: A Survey of 1000+ Open-Access Medical Imaging Datasets for Foundation Model Development

Neural Rendering for Stereo 3D Reconstruction of Deformable Tissues in Robotic Surgery

[MICCAI'23] Foundation Model for Endoscopy Video Analysis via Large-scale Self-supervised Pre-train

medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis

[EARTH@MICCAI'2024] EndoGS: Deformable Endoscopic Tissues Reconstruction with Gaussian Splatting

Official Repo for the paper "Dense Depth Estimation in Monocular Endoscopy with Self-supervised Learning Methods" (TMI)

[MedIA2022 & ICRA2021] Self-Supervised Monocular Depth and Ego-Motion Estimation in Endoscopy: Appearance Flow to the Rescue

Official repo for the paper "SAGE: SLAM with Appearance and Geometry Prior for Endoscopy" (ICRA 2022)

Frontiers in Intelligent Colonoscopy [ColonSurvey | ColonINST | ColonGPT]

A repository for surgical action triplet dataset. Data are videos of laparoscopic cholecystectomy that have been annotated with <instrument, verb, target> labels for every surgical fine-grained activity.

Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'25, MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

Official Repo for the paper "Extremely Dense Point Correspondences using a Learned Feature Descriptor" (CVPR 2020)

ICRA 2025: Advancing Dense Endoscopic Reconstruction with Gaussian Splatting-driven Surface Normal-aware Tracking and Mapping

Deformable visual odometry for stereo endoscopic videos

PPSNet: Leveraging Near-Field Lighting for Monocular Depth Estimation from Endoscopy Videos (ECCV, 2024)

[MedIA'2025] MonoPCC: Photometric-invariant Cycle Constraint for Monocular Depth Estimation of Endoscopic Images

GitHub repository for the Kvasir-instrument dataset

1st place solution to EAD 2020 (segmentation track) (https://ead2020.grand-challenge.org/)

Python packaging for image processing of fibre bundle images, including core removal, mosaicing and super-resolution.

Endoscopic and Pathological data extraction for various endo-pathological data extraction

A PyTorch tool kit for estimating the circular content area in endoscopic footage.

Temporal Segmentation of Full-Procedure Colonoscopy Videos

c++ and python visualize & streaming interface for super cheap endoscope cameras

EndoVLM: An Endoscopy Vision-Language Pre-training Model via Anatomy-Guided Sparsity and Progressive Alignment

Live USB endoscope camera monitor on a Raspberry Pi with C-Berry28 display using OpenCV

Semi-supervised teacher-student framework

Endoscopy Image Processing & Classification. Academic project as a part of the course AI in Biomedicine. Classify using pre-trained InceptionNetv3 and EfficientNetB2 classifiers and compare the accuracy.

The code to visualize colon-bench (MICCAI 2026) data and run evaluations of MLLMs on the benchmark.

EndoCheck is a web application that allows doctors to automatically process endoscopic images or videos of patients to screen for anomalies.